Jmol Official Webpage Online browser version

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• set measurementNumbers OFF # remove measure label (https://chemapps.stolaf.edu/jmol/docs/#measure)
• font measure 22 # size
• set measurementUnits ANGSTROMS
• set measureAllModels OFF # several models
• set measurementLabels = false
• set measure 4 # thickness

1. How to show polyhedra?

• polyhedra 3. (cobalt) to (oxygen) TRANSLUCENT ; polyhedra edges ;

1. How to turn off info about unit cell?

• set displayCellParameters False

1. labels https://chemapps.stolaf.edu/jmol/docs/#labellabels on

• set labelfront
• label %a - show atom type and number from 0 for cif, %i - just number from 1, %e - only atom types, %D - 0based index
• color label black
• font label 15

1. Setup axes

• set axes 10 # thickness
• axes scale 2.0 # length
• font axes 26
• color axes red

1. Spin

• Vectors scale 3 #length
• Vectors 3 # thickness

1. convert to gif

• ffmpeg -framerate 60 -pattern_type glob -i '*.png' -r 15 -vf scale=512:-1 out.gif
• ffmpeg -pattern_type glob -i '*.png' -vf scale=“'if(gt(a,640/480),640,-1)':'if(gt(a,640/480),-1,480)':eval=frame,pad=640:480:(ow-iw)/2:(oh-ih)/2:white” output.gif #to save proportions
• convert *png mov.gif
• convert -delay 10 *png mov.gif

1. Other

• set frank off # turn off jmol logo
• color atoms TRANSLUCENT

1. Ball and sticks

• spacefill 20%;wireframe 0.15

Literature: How to Use Jmol to Study and Present Molecular Structures, Volume 1 By Angel Herráez