vsoft:jmol
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vsoft:jmol [2023/01/21 22:36] – a.boev | vsoft:jmol [2024/04/26 10:15] (current) – a.boev | ||
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===== Basics ===== | ===== Basics ===== | ||
+ | See help [[https:// | ||
===== Console ===== | ===== Console ===== | ||
+ | |||
+ | - Set up measure | ||
+ | * set measurementNumbers OFF # remove measure label (https:// | ||
+ | * font measure 22 # size | ||
+ | * set measurementUnits ANGSTROMS | ||
+ | * set measureAllModels OFF # several models | ||
+ | * set measurementLabels = false | ||
+ | * set measure 4 # thickness | ||
+ | - How to show polyhedra? | ||
+ | * polyhedra 3. (cobalt) to (oxygen) TRANSLUCENT ; polyhedra edges ; | ||
+ | - How to turn off info about unit cell? | ||
+ | * set displayCellParameters False | ||
+ | - labels https:// | ||
+ | * set labelfront | ||
+ | * label %a - show atom type and number from 0 for cif, %i - just number from 1, %e - only atom types, %D - 0based index | ||
+ | * color label black | ||
+ | * font label 15 | ||
+ | - Setup axes | ||
+ | * set axes 10 # thickness | ||
+ | * axes scale 2.0 # length | ||
+ | * font axes 26 | ||
+ | * color axes red | ||
+ | - Spin | ||
+ | * Vectors scale 3 #length | ||
+ | * Vectors 3 # thickness | ||
+ | - convert to gif | ||
+ | * ffmpeg | ||
+ | * ffmpeg -pattern_type glob -i ' | ||
+ | * convert *png mov.gif | ||
+ | * convert -delay 10 *png mov.gif | ||
+ | - Other | ||
+ | * set frank off # turn off jmol logo | ||
+ | * color atoms TRANSLUCENT | ||
+ | - Ball and sticks | ||
+ | * spacefill 20%; | ||
+ | |||
+ | |||
+ | |||
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+ | Literature: | ||
+ | How to Use Jmol to Study and Present Molecular Structures, Volume 1 By Angel Herráez | ||
+ | |||
vsoft/jmol.1674329799.txt.gz · Last modified: 2023/01/21 22:36 by a.boev