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res:magnus

Magnus cluster

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Workload manager - SLURM

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Run script example

VASP with Occupation Matrix Control

#!/bin/bash   
#SBATCH -J my_job_LiMnO2 #name of job
#SBATCH -N 1 #number of nodes
#SBATCH -n 16 #number of cores
#SBATCH -o %x.e%j #out file path
#SBATCH -e %x.e%j.err #err file path
#SBATCH --mem-per-cpu=7675 #memory limit
#SBATCH -p AMG-medium #type of schedule: AMG (24 h limit), AMG-medium (72 h), AMG-long (336 h)


module load Compiler/Intel/17u8 Q-Ch/VASP/5.4.4_OMC ScriptLang/python/3.6i_2018u3 Q-Ch/Gaussian/16.RevA03
ulimit -s unlimited

# cd /home/user/project_folder # provide the folder if the script is submitted not from project folder

mpirun vasp_std >log

LAMMPS

#!/bin/bash   
#SBATCH -J meltcool10Kpps # job name, should coincide with input filename
#SBATCH -N 1
#SBATCH -n 8 # number of cores
#SBATCH -o %x.e%j
#SBATCH -e %x.e%j.err
#SBATCH --mem-per-cpu=8gb

export OMP_NUM_THREADS="'${SLURM_CPUS_PER_TASK:-1}'" 
echo 'SLURM_NTASKS' $SLURM_NTASKS$ 

module load  Compiler/Intel/18u4
module load Q-Ch/LAMMPS/20Nov2019/intel/2018u4


mpirun -np ${SLURM_NTASKS} lammps -sf opt -pk omp ${OMP_NUM_THREADS} -in $SLURM_JOB_NAME.lam -log $SLURM_JOB_NAME.out >$SLURM_JOB_NAME.stdout 
res/magnus.txt · Last modified: 2023/04/21 21:29 by a.boev

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